PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088898.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YB
Protein Properties Length: 157aa    MW: 17782 Da    PI: 6.0767
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.61.3e-1217109693
           NF-YB   6 rflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                     ++lP + v r++k+ l +   ++ is  +d+ +   e +  fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl++ l+++r+ 
  XP_011088898.1  17 EELPKTIVRRVVKEKLSQlatDSEISvlRDSLQAFCESARIFIHYLSATANDICRESNRQIINAEDVFKALEEIEFAEFIGPLRACLEEFRQK 109
                     5789999999999987651114555533788999999999***************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-2811149IPR009072Histone-fold
PfamPF008086.5E-81887IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.67E-2219131IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAEKDKELTE KVVPEAEELP KTIVRRVVKE KLSQLATDSE ISVLRDSLQA FCESARIFIH  60
YLSATANDIC RESNRQIINA EDVFKALEEI EFAEFIGPLR ACLEEFRQKN PGRKVASSGS  120
SKAKDTSKNA KRKPPAQSEG RKKRREVESN RDEDDAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130144KRKPPAQSEGRKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088898.11e-110PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A022QFH72e-81A0A022QFH7_ERYGU; Uncharacterized protein
STRINGPOPTR_0009s16500.17e-50(Populus trichocarpa)
STRINGPGSC0003DMT4000677672e-49(Solanum tuberosum)
STRINGVIT_06s0080g00460.t013e-49(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-38nuclear factor Y, subunit B11